Introduction to Structural Bioinformatics offers a complete overview to the fundamental concepts and methodologies of structural bioinformatics and computational structural biology. The book is divided into three sections, beginning with a discussion of the key principles of bioinformatics and fundamental aspects including bioinformatics databases, multiple sequence alignment and machine learning. Section two then moves on to structural bioinformatics, where topics include Monte Carlo simulation, protein structure prediction, RNA structure prediction, and protein design. The final section of…mehr
Introduction to Structural Bioinformatics offers a complete overview to the fundamental concepts and methodologies of structural bioinformatics and computational structural biology. The book is divided into three sections, beginning with a discussion of the key principles of bioinformatics and fundamental aspects including bioinformatics databases, multiple sequence alignment and machine learning. Section two then moves on to structural bioinformatics, where topics include Monte Carlo simulation, protein structure prediction, RNA structure prediction, and protein design. The final section of the book focuses on experimental structural determination, where chapters focus on techniques including X-ray crystallography, nuclear magnetic resonance and cryo-electron microscopy. This is an ideal guide to the key principles, methods and most up-to-date developments across structural bioinformatics and computational structural biology, providing a comprehensive reference for postgraduate students, instructors and researchers working in these and adjacent subjects.
Dr Yang Zhang is Professor in the Department of Computer Science, School of Computing, National University of Singapore (NUS). He also serves as Professor and Senior Principal Investigator in the Department of Biochemistry at School of Medicine, NUS, and Cancer Science Institute of Singapore, respectively. Prior to this, Dr Zhang worked as Professor in the Department of Computational Medicine and Bioinformatics and the Department of Biological Chemistry, University of Michigan. Dr Zhang has been teaching graduate courses in bioinformatics for more than a decade. His research interests are in artificial intelligence, deep neural network learning, protein folding, structure prediction, and protein design and engineering. Dr. Zhang is the inventor of many fundamental concepts and methods in structural bioinformatics, including TM-score, TM-align, I-TASSER, and QUARK. Dr. Zhang has received honours including the Alfred P Sloan Award, US NSF Career Award, ASBMB DeLano Award, and University of Michigan Basic Science Research Award.
Inhaltsangabe
Part 1: Bioinformatics Basics 1. Bioinformatics databases 2. Pairwise sequence alignments and database search 3. Evolution and phylogenetic tree 4. Multiple sequence alignments 5. Machine learning and deep neural-network learning Part 2: Structural Bioinformatics 6. Protein structure alignments 7. Monte Carlo simulation and local energy minimization 8. Protein structure prediction 9. RNA structure prediction 10. Quaternary structure prediction 11. Function annotations 12. Protein design Part 3: Experimental Structural Determination 13. Principle of X-ray crystallography and molecular replacement 14. Introduction to nuclear magnetic resonance 15. Cryo-electron microscopy for protein structure determination
Part 1: Bioinformatics Basics 1. Bioinformatics databases 2. Pairwise sequence alignments and database search 3. Evolution and phylogenetic tree 4. Multiple sequence alignments 5. Machine learning and deep neural-network learning Part 2: Structural Bioinformatics 6. Protein structure alignments 7. Monte Carlo simulation and local energy minimization 8. Protein structure prediction 9. RNA structure prediction 10. Quaternary structure prediction 11. Function annotations 12. Protein design Part 3: Experimental Structural Determination 13. Principle of X-ray crystallography and molecular replacement 14. Introduction to nuclear magnetic resonance 15. Cryo-electron microscopy for protein structure determination
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