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In this book a critical analysis has been made regarding the alterations induced by low temperature in cyanobacterial photosynthesis. Low temperature mainly affects PS-II off cyanobacteria in addition to LHC alterations, phycobilisomes. This low temperature alters the energy transfer by acting at the level of phycocayanin a chromo protien involved in energy transfer to PS-II. This cold stress attacks the linker polypeptide of phycocyanin which attachses phycocyanin to allophycocyanin.