Rice Functional Genomics (eBook, PDF)

Challenges, Progress and Prospects
Redaktion: Upadhyaya, Narayana M.

• Format: PDF

Produktbeschreibung

Rice has been chosen as a model cereal for functional genomics by the international scientific community because the ease with which it can be transformed, its well understood genetics with detailed genome physical maps, and dense molecular markers. In addition, there is great similarities in gene sequence, gene structure, gene order, and gene function among all the cereals and grasses. Genes identified in rice as being important will also be important in other cereals and any understanding of rice genes is directly applicable to the genes of other cereals. This book details rice functional genomics. It takes a multi-pronged genome-wide approach using structural similarities, expression profiles, and mutant phenotypes. Coverage includes the current status of genome sequencing and annotation, various tools, and resources being developed worldwide in the form of expressed sequence tags (ESTs), full-length cDNA, gene expression profiles and gene tagging.

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Produktdetails

• Verlag: Springer US
• Seitenzahl: 500
• Erscheinungstermin: 19. Mai 2007
• Englisch
• ISBN-13: 9780387489148
• Artikelnr.: 37287762

Autorenporträt

Narayana M. Upadhyaya is currently a Principal Research Scientist at CSIRO Plant Industry, Canberra, Australia and leads the group working on Rice Functional Genomics. Previously, he pioneered research into the sequencing of the Rice Ragged Stunt Oryzavirus (RRSV) genome and produced RRSV genome-based synthetic resistance gene constructs while working on a Rockefeller Foundation-funded Rice Biotechnology project (1990-1997) which involved international collaboration. He has been the principal investigator in the bilateral science and technology collaborative research with China (1997-2000). He was instrumental in developing and setting up the rice transformation facility at CSIRO Plant Industry not only for RRSV research but also for other research projects where rice has been used as a model system. He has developed the T-DNA double right border (DRB) vector technology for generating selectable marker-free (SMF) transgenic plants. Since then he has developed a research project on "Rice Functional Genomics" (funded by Australia's RIRDC and the NSW Centre for Agricultural Genomics) aimed at determining the function of rice genes using an insertional mutagenesis approach. The tools and resources being developed in the group are internationally competitive and as a result CSIRO Plant Industry has become an active member of the International Rice Functional Genomics Consortium. Dr. Upadhyaya has 50 refereed papers, 11 invited presentations and over 50 conference presentations to his credit.

Inhaltsangabe

Rice Genome Sequence: The Foundation for Understanding the Genetic Systems.- Rice Genome Annotation: Beginnings of Functional Genomics.- Genome-Wide RNA Expression Profiling in Rice.- Rice Proteomics: A Step Toward Functional Analysis of the Rice Genome.- Metabolomics: Enabling Systems-Level Phenotyping in Rice Functional Genomics.- Use of Naturally Occurring Alleles for Crop Improvement.- Chemical- and Irradiation-Induced Mutants and TILLING.- T-DNA Insertion Mutants as a Resource for Rice Functional Genomics.- Transposon Insertional Mutants: A Resource for Rice Functional Genomics.- Gene Targeting by Homologous Recombination for Rice Functional Genomics.- RNA Silencing and Its Application in Functional Genomics.- Activation Tagging Systems in Rice.- Informatics Resources for Rice Functional Genomics.- The Oryza Map Alignment Project (OMAP): A New Resource for Comparative Genome Studies within Oryza.- Application of Functional Genomics Tools for Crop Improvement.- From Rice to Other Cereals: Comparative Genomics.

Rezensionen

From the reviews:

"This book represents an excellent set of (reviewed) reviews that explains what is happening in the world of rice genomic research now. ... This is a useful book for genetic resources workers because understanding the way in which the genome works is generating huge numbers of mutants required for forward (from phenotype to genome sequence) and reverse genetics (genome sequence to phenotype)." (D. Vaughan, Genetic Resources and Crop Evolution, Vol. 54, 2007)