In this book we try to gather the required mathematical knowledge and introduce them more intuitively. Many numerical simulations of basic processes and equation will be given to provide the reader with a physical understanding of the different terms in the underlying equations. We will start the modeling process from a mesoscopic level which deals with the system of an intermediate length scale between the size of the atoms or molecules and the bulk of the material. This provides a unique opportunity for the reader to intuitively add different phenomena to their models and equipped with the necessary mathematical tools derive the final models for their problems.
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